# Amira Script
remove -all
remove glow.col dcc1507i2hjan290634k00.rec_0010.mrc dcc1507i2hjan290634k00b.am dcc1507i2hjan290634k00a.am SurfaceGen OrthoSlice OrthoSlice2 OrthoSlice3 OrthoSlice4

# Create viewers
viewer setVertical 0

viewer 0 setBackgroundMode 1
viewer 0 setBackgroundColor 0 0.1 0.3
viewer 0 setBackgroundColor2 0.7 0.7 0.8
viewer 0 setTransparencyType 5
viewer 0 setAutoRedraw 0
viewer 0 show
mainWindow show

set hideNewModules 1
[ load ${AMIRA_ROOT}/data/colormaps/glow.col ] setLabel glow.col
glow.col setIconPosition 0 0
glow.col fire
{glow.col} setMinMax 0 255
glow.col flags setValue 1
glow.col shift setMinMax -1 1
glow.col shift setButtons 0
glow.col shift setIncrement 0.133333
glow.col shift setValue 0
glow.col shift setSubMinMax -1 1
glow.col scale setMinMax 0 1
glow.col scale setButtons 0
glow.col scale setIncrement 0.1
glow.col scale setValue 1
glow.col scale setSubMinMax 0 1
glow.col fire
glow.col setViewerMask 65535

set hideNewModules 0
[ load -raw ${SCRIPTDIR}/dcc1507i2hjan290634k00.rec_0010.mrc little xfastest byte 1 318 929 317 0 317 0 928 0 316 -header 1024 ] setLabel dcc1507i2hjan290634k00.rec_0010.mrc
dcc1507i2hjan290634k00.rec_0010.mrc setIconPosition 13 56
dcc1507i2hjan290634k00.rec_0010.mrc fire
dcc1507i2hjan290634k00.rec_0010.mrc fire
dcc1507i2hjan290634k00.rec_0010.mrc setViewerMask 65535

set hideNewModules 0
[ load ${SCRIPTDIR}/dcc1507i2hjan290634k00a-files/dcc1507i2hjan290634k00b.am ] setLabel dcc1507i2hjan290634k00b.am
dcc1507i2hjan290634k00b.am setIconPosition 34 233
dcc1507i2hjan290634k00b.am fire
dcc1507i2hjan290634k00b.am primary setValue 0 0
dcc1507i2hjan290634k00b.am fire
dcc1507i2hjan290634k00b.am setViewerMask 65535

set hideNewModules 0
[ load ${SCRIPTDIR}/dcc1507i2hjan290634k00a.am ] setLabel dcc1507i2hjan290634k00a.am
dcc1507i2hjan290634k00a.am setIconPosition 13 75
dcc1507i2hjan290634k00a.am ImageData connect dcc1507i2hjan290634k00.rec_0010.mrc
dcc1507i2hjan290634k00a.am fire
dcc1507i2hjan290634k00a.am primary setValue 0 0
dcc1507i2hjan290634k00a.am fire
dcc1507i2hjan290634k00a.am setViewerMask 65535
dcc1507i2hjan290634k00a.am select

set hideNewModules 0
create HxGMC {SurfaceGen}
SurfaceGen setIconPosition 104 117
SurfaceGen data connect dcc1507i2hjan290634k00a.am
SurfaceGen fire
SurfaceGen smoothing setValue 0 0
SurfaceGen options setValue 0 1
SurfaceGen options setValue 1 0
SurfaceGen border setValue 0 1
SurfaceGen border setValue 1 0
SurfaceGen minEdgeLength setMinMax 0 0 0.800000011920929
SurfaceGen minEdgeLength setValue 0 0
SurfaceGen materialList setValue 0 0
SurfaceGen fire
SurfaceGen setViewerMask 65535

set hideNewModules 0
create HxOrthoSlice {OrthoSlice}
OrthoSlice setIconPosition 307 56
OrthoSlice data connect dcc1507i2hjan290634k00.rec_0010.mrc
{OrthoSlice} fire
OrthoSlice sliceOrientation setValue 1
{OrthoSlice} fire
OrthoSlice options setValue 0 0
OrthoSlice options setValue 1 0
OrthoSlice options setValue 2 0
OrthoSlice mappingType setValue 0 0
OrthoSlice linearRange setMinMax 0 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice linearRange setValue 0 108
OrthoSlice linearRange setMinMax 1 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice linearRange setValue 1 214
OrthoSlice contrastLimit setMinMax 0 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice contrastLimit setValue 0 7
OrthoSlice colormap setDefaultColor 1 0.8 0.5
OrthoSlice colormap setDefaultAlpha 1.000000
OrthoSlice colormap connect glow.col
OrthoSlice sliceNumber setMinMax 0 928
OrthoSlice sliceNumber setButtons 1
OrthoSlice sliceNumber setIncrement 1
OrthoSlice sliceNumber setValue 458.121
OrthoSlice sliceNumber setSubMinMax 0 928
OrthoSlice transparency setValue 0
OrthoSlice setFrameWidth 0
OrthoSlice setFrameColor 1 0.5 0
OrthoSlice frame 1
OrthoSlice fire

OrthoSlice fire
OrthoSlice setViewerMask 65534

set hideNewModules 0
create HxOrthoSlice {OrthoSlice2}
OrthoSlice2 setIconPosition 165 165
OrthoSlice2 data connect dcc1507i2hjan290634k00.rec_0010.mrc
{OrthoSlice2} fire
OrthoSlice2 sliceOrientation setValue 0
{OrthoSlice2} fire
OrthoSlice2 options setValue 0 0
OrthoSlice2 options setValue 1 0
OrthoSlice2 options setValue 2 0
OrthoSlice2 mappingType setValue 0 0
OrthoSlice2 linearRange setMinMax 0 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice2 linearRange setValue 0 108
OrthoSlice2 linearRange setMinMax 1 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice2 linearRange setValue 1 255
OrthoSlice2 contrastLimit setMinMax 0 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice2 contrastLimit setValue 0 7
OrthoSlice2 colormap setDefaultColor 1 0.8 0.5
OrthoSlice2 colormap setDefaultAlpha 1.000000
OrthoSlice2 colormap connect glow.col
OrthoSlice2 sliceNumber setMinMax 0 316
OrthoSlice2 sliceNumber setButtons 1
OrthoSlice2 sliceNumber setIncrement 1
OrthoSlice2 sliceNumber setValue 237
OrthoSlice2 sliceNumber setSubMinMax 0 316
OrthoSlice2 transparency setValue 0
OrthoSlice2 setFrameWidth 0
OrthoSlice2 setFrameColor 1 0.5 0
OrthoSlice2 frame 1
OrthoSlice2 fire

OrthoSlice2 fire
OrthoSlice2 setViewerMask 65534

set hideNewModules 0
create HxOrthoSlice {OrthoSlice3}
OrthoSlice3 setIconPosition 307 177
OrthoSlice3 data connect dcc1507i2hjan290634k00.rec_0010.mrc
{OrthoSlice3} fire
OrthoSlice3 sliceOrientation setValue 2
{OrthoSlice3} fire
OrthoSlice3 options setValue 0 0
OrthoSlice3 options setValue 1 0
OrthoSlice3 options setValue 2 0
OrthoSlice3 mappingType setValue 0 0
OrthoSlice3 linearRange setMinMax 0 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice3 linearRange setValue 0 108
OrthoSlice3 linearRange setMinMax 1 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice3 linearRange setValue 1 214
OrthoSlice3 contrastLimit setMinMax 0 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice3 contrastLimit setValue 0 7
OrthoSlice3 colormap setDefaultColor 1 0.8 0.5
OrthoSlice3 colormap setDefaultAlpha 1.000000
OrthoSlice3 colormap connect glow.col
OrthoSlice3 sliceNumber setMinMax 0 317
OrthoSlice3 sliceNumber setButtons 1
OrthoSlice3 sliceNumber setIncrement 1
OrthoSlice3 sliceNumber setValue 128.288
OrthoSlice3 sliceNumber setSubMinMax 0 317
OrthoSlice3 transparency setValue 0
OrthoSlice3 setFrameWidth 0
OrthoSlice3 setFrameColor 1 0.5 0
OrthoSlice3 frame 1
OrthoSlice3 fire

OrthoSlice3 fire
OrthoSlice3 setViewerMask 65534

set hideNewModules 0
create HxOrthoSlice {OrthoSlice4}
OrthoSlice4 setIconPosition 300 119
OrthoSlice4 data connect dcc1507i2hjan290634k00.rec_0010.mrc
{OrthoSlice4} fire
OrthoSlice4 sliceOrientation setValue 2
{OrthoSlice4} fire
OrthoSlice4 options setValue 0 0
OrthoSlice4 options setValue 1 0
OrthoSlice4 options setValue 2 0
OrthoSlice4 mappingType setValue 0 0
OrthoSlice4 linearRange setMinMax 0 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice4 linearRange setValue 0 108
OrthoSlice4 linearRange setMinMax 1 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice4 linearRange setValue 1 214
OrthoSlice4 contrastLimit setMinMax 0 -1.00000001384843e+24 1.00000001384843e+24
OrthoSlice4 contrastLimit setValue 0 7
OrthoSlice4 colormap setDefaultColor 1 0.8 0.5
OrthoSlice4 colormap setDefaultAlpha 1.000000
OrthoSlice4 colormap connect glow.col
OrthoSlice4 sliceNumber setMinMax 0 317
OrthoSlice4 sliceNumber setButtons 1
OrthoSlice4 sliceNumber setIncrement 1
OrthoSlice4 sliceNumber setValue 245
OrthoSlice4 sliceNumber setSubMinMax 0 317
OrthoSlice4 transparency setValue 0
OrthoSlice4 setFrameWidth 0
OrthoSlice4 setFrameColor 1 0.5 0
OrthoSlice4 frame 1
OrthoSlice4 fire

OrthoSlice4 fire
OrthoSlice4 setViewerMask 65534

set hideNewModules 0


viewer 0 setCameraPosition -349.875 -95.4971 -149.158
viewer 0 setCameraOrientation 0.627851 0.544997 -0.555681 3.00962
viewer 0 setCameraFocalDistance 815.983
viewer 0 setAutoRedraw 1
viewer 0 redraw